A_Parked_Car said:
Out of those examples, the most balanced account is what is portrayed in The Pacific. I don't believe you ever see an American marine give quarter to a Japanese soldier, or vice versa.
There is a telling scene in the Pacific regarding the Marines and the IJA. In Episode 9, the Marines come across a handful of Japanese POWs, an extremely rare sight for them. Turns out that they had been taken hostage by the Army, rather than the Marines. And then there is a scuffle where the Marines nearly murder the prisoners out of spite.
It just shows how much bad blood came to pass in the Pacific, and why there are so many raw emotions regarding the Japanese military even to this day.
Also, the Wind Rises technically deals with Horikoshi's development of the A5M, not the A6M Zero/Zeke. I believe the controversy comes less from the film denying war crimes (Jiro's character laments the destruction caused by his designs late in the film), and more from the conditions under which the planes were built. Lots of Koreans were used as laborers by the Japanese, and they built thousands of planes under extremely harsh working conditions. This isn't brought up in the film. Then you get the leftist political parties coming in and blasting Miyazaki for making a film based on a military designer, while nationalists declare him a traitor for daring to voice his opinion against the conservatives.
However, the film's controversy has more or less been appropriated as an excuse to start talking about war crimes.