What did you expect? Honestly.
They would've lost their face completely if they actually knuckled under and changed the ending outright, they were never even thinking to do that.
Best we could've hoped for was a last renegade/paragon option to let the battle make its course, but everything else was, CLEARLY, going to stay.
Plotholes included.
I'm not happy with this, but then again what were they supposed to do? If they did cave, the rest of the industry's foot would've lodged itself so far up their collective ass they would've felt the heel rubbing the back of their throat. It was the only logical outcome. Honestly ,at least we will get a semi-decent ending cinematic. And i doubt anyone will seriously consider buying any DLC to further enrich the experience leading up to the shitty ending nobody likes, so the market has spoken on that.
Let's just hope Bioware employees start running and creating new companies soon, so EA will only have a meaningless brand name in their hands, for them to completely run into the ground.
And on the subject of indoctrination theory, I want to get something off my chest:
You people sound like those FF8 fans that couldn't accept that, yeah, final fantasy often makes no sense, and came up with that pipedream of an explanation about how Squall clearly dies during the assassination attempt and the rest of the plot if actually just him delirious in the moments before his death. That is retarded, and so is indoctrination theory.
"But it is consistent and it would explain the plotholes and blahblahblah!" You know what also explains all of those? Stupidity. Kerpyshyn was booted off the project, he was the only one with a shred of an idea on how to end the series, Hudson decided he was going to make his masterpiece and fuck what anyone else thought and voilà, the perfect storm of stupid. Humans are hardwired to see patterns, regardless of there actually being patterns to see.
I understand that it is more comfortable an idea, dealing with a brilliant trickster rather than an honest fool, but NOBODY woul go to those lenghts to fuck with the public, especially when they've got that big a shitstorm on their hands.
And even if it turns out that indoctrination theory is right, i will bet my ass and that of anyone who happens to be in the same room as me at the time the DLC comes out that they adopted it after you people came up with it. Which they will not do, because it's even worse than Shamalayan's shitty twist endings.
They made a shitty ending because they couldn't be arsed to do a proper one. There is no great plan. Deal with it.