As much as I want to list cartoons off Cartoon Network and Nickelodeon (which would have made up a good chunk of my 90's childhood right there), I'm going to list those animated shows on Disney Channel that were based on their animated movie counterpart (kinda):
The Little Mermaid
Aladdin
Timon & Pumbaa (My favorite of the one's I'm listing...)
101 Dalmations (Stop lying, Google! It was 1998, not 2011!)
I sometimes check them out whenever Disney Junior (almost confused it for Nick Jr. as I was typed that) has them on, but man do I miss these shows being shown at a time that I shouldn't be asleep, dammit!
Edit: Honorable mention goes to the show Sliders, but then again I didn't start watching that until high school whenever my Algebra/Calculus teacher showed it to us the day after taking a test...