I love being a nerd, precisely for the "versus" debates. I think if you go back to the days of the Greeks, you'll probably find unshaven dudes sitting around, arguing over who would win in a Hercules/Perseus match-up, citing any and all minutia from each demigod's barest related tales. (For the historically-challenged, it might also interest you to know that the Romans had twenty-sided dice - no, I'm not kidding.)
However, Goku is a fallback nerd argument to eclipse all of them; the sort of cliche that cannot be justified as quaint or clever in any regard, and any nerd still trying to force him into every "versus" battle has zero cred with me. Firstly, Goku's creator, and various writers associated with him, are simply going to come up with some stupid means for him to succeed, no matter how ridiculous. He is not a character who lives within his means, or his story arch, so he probably should be excluded from these sorts of debates. Most characters have defining borders. Spider-Man, for instance, clings to walls, is very smart, is fast, precognitive to danger, and is only so-so on the superhero strength scale. He can fail because is defined by those limitations, and when he succeeds, it's within those limitations. He finds some way to resourcefully get around them, or through them, reasonably. He turns weakness into strength.
Goku, on the other hand, simply grunts and groans, sometimes dies, and basically punches his way to success by sheer escalation of raw power. He gets stronger because the writer says so, afraid to permanently lose his cash cow. There's little to him, and nothing real in the way of resourcefulness. He doesn't have to grow as a character, because the next time he gets injured, the writer will simply have him come back with more muscles. By virtue of this meme, Goku will eventually pwn, but he should never be proud of it, and nobody ought to be praising him for it. It's a grunt-your-way-to-violent-success arc. It doesn't really mean anything.
Not to mention that, though they also talk a lot, the characters in Naruto at least try to get their jitsu off quickly. Goku usually stands around talking about fighting for about 17 episodes, before he then "powers up" for another 10, leaving himself totally exposed while doing so. His enemies just stand there watching and waiting. If Goku existed in Naruto's world, he would have the crap kicked out of him before his hair turned yellow. But being in his own world, he is immune to preemptive attacks, protected by the same piss-poor writing that gives him godlike strength each time he stubs his little toe.