I dunno, if you ignore Ubisoft, it doesn't seem that bad to me. I love open world games because they often come with fantastic modding support. Are Bethesda games particularly amazing at launch? No, but give them a couple months and you'll already be seeing some excellent content generated by the community.
I don't really care for the GTA franchise either, but that has less to do with it being open world and more to do with it trying to be too many things while doing none of them well.
Though, looking again at Zhukov's list, that may seem like a lot, but when you compare it to other genres of games, it's really not bad at all. I've played 9 of the games on that list and the only one I was lukwarm on was Farcry 4 which I got for free with my GTX 970.
Skyrim -mods!
Fallout 4 -mods along with some shooting that's actually pretty decent
Farcry 3 -I hadn't played that many AC games, so despite this very clearly borrowing a lot, I wasn't worn out yet. Farcry 4 is when that happened.
Arkham City -I admit, the open world didn't add anything to this series for me. Gliding around didn't stay fresh for very long, but the world was small enough for it to not detract for the game IMO.
Shadow of Mordor -I loved this game. The world wasn't all that interesting, for me, it was more about having a playground to use all of my crazy abilities while messing around with my own orcs.
Saints Row 4 -the first Saints game I played, so that's probably a big reason for why some things about it didn't annoy me. Best super hero game ever and it was pretty funny too.
Just Cause 3 -mods as well as simply being good, explosive fun.
Black Flag -the open world is part of what made this game great for me. I loved sailing around and being a pirate. Didn't care about the assassin stuff, but feeling like I was the top dog on the ocean was something special. It was the first AC game I played since II.
So ya, I think with a lot of lesser open worlds, them being open world isn't the issue, it's that the devs are lazy about making the gameplay within those world compelling, or in the case with Ubisoft, each new game is way too familiar.
Edit: I somehow missed the Witcher 3 from that list. For me, it has the greatest open world ever, and it's really not even close.