Disclaimer: No personal offense is intended, but since forums can be such volatile places I point out that this post is intended in the spirit of healthy debate.
Anyhoo...
The problem is, modern atheism deifies science in the same manner that the Egyptians deified the sun, or the manner in which the ancient Pagans deified the changes in the seasons and the growth or their crops, etc. It's just another belief system disguised as scientific thinking. Now, don't get me wrong, I'm not particularly religious and I'd say there's no proof of any deity (although polytheistic religions utilise prayer as an interesting psychological tool to get in touch with character traits that one would like to display, but that's for a different conversation). However, even Stephen Hawking, irrefutably the greatest scientific mind on the planet, refuses to rule out the concept of religion, probably because the origins of the universe are still shrouded in mystery and there is nothing to disprove the idea of a greater power. Maybe it will get disproven one day, but it hasn't been yet. And, of course, this leaves any hypothesis concerning the existence of deity flawed and incomplete, because we do not yet understand the universe or physics well enough to have all the necessary evidence to come to a fully informed conclusion. When someone like Hawking is willing to stay open minded, then I don't care what Dawkins (nasty bullying little man that he is) or anyone else says, the rational, logical and above all scientific thing to do is to stay open minded until there is conclusive proof either way.
To be honest, most belief systems have screwed things up at some time or another, whether it's the crusades, small town xenophobia, or a dispute over the colour of a flag. When something challenges something that a person has a strongly held belief in, they will usually defend the belief before they will choose to change the belief. Strong, set beliefs with no flexibility to consider an outside viewpoint are the problem, not religion per se. After all, is there anyone in their right mind that actually believes that Dawkins would hesitate to set up concentration camps for religious people if he had the power to do so and get away with it? Despite the fact that there are many excellent scientists that also hold religious beliefs? Again, it's inflexibility of belief, not the belief itself that causes problems.