I do remember crying with Bridge to Terabinthia (sp). But that was in 5th grade. However, more recently I cried to one of the final episodes to Cowboy Bebop. 'Twas when ))**SPOILER**(( Ed left to join her dad. That didn't really hit me until Ein came for her and had to look back, knowing what/who he was leaving behind. Then to top it all off was the painting Ed did on the Bebop. Very reminiscent of the M*A*S*H* finale. ))**END SPOILER**((
But those were the only two pieces of media I can remember making me cry. There was one documentary of a bear and beaver working together to do something...like travel, and then later they see each other and don't truely remember the other. But I don't remember the name of it.